Senior Software Engineer, Full Stack

AI overview

Build high-performance full-stack applications using Python and modern JavaScript frameworks while directly supporting biosecurity, epidemiology, and biological data workflows.

Our mission is to make biology easier to engineer. Ginkgo is constructing, editing, and redesigning the living world in order to answer the globe’s growing challenges in health, energy, food, materials, and more. Our bioengineers make use of an in-house automated foundry for designing and building new organisms. 


 

This role strongly prefers candidates located in the Boston area with the ability to regularly commute to our Seaport headquarters.

Due to the nature of this role, candidates should expect to support U.S. Government customers. Candidates must have the ability to obtain and maintain a U.S. security clearance per business requirements. In connection therewith, candidates must be willing to undergo a background investigation and meet eligibility requirements. Clearance sponsorship will be available.

Candidates who currently hold an active or recently inactive U.S. Government security clearance are encouraged to apply.

Ginkgo Biosecurity is building next-generation biosecurity infrastructure to help governments and partners detect, attribute, and deter biological threats. Our mission extends across public health, national security, and global defense, ensuring nations can rapidly identify dangerous pathogens, understand where threats originate, and respond with confidence.

We are seeking a Senior Full-Stack Software Engineer to join the Biosecurity engineering team. This role is ideal for someone who thrives in cross-disciplinary environments and is excited to build production software that directly supports biosecurity, epidemiology, and biological data workflows. We are looking for an engineer who is not only a technical expert but also a forward-thinker who embraces AI-augmented development and maintains a 'deploy-with-confidence' culture through rigorous CI/CD and automated testing

You will work across the stack—from backend services and data pipelines to user-facing web applications—building reliable, scalable systems that turn complex biological data into actionable insights.

Responsibilities

  • Develop high-performance full-stack applications that translate complex biological data and operational needs into intuitive software using Python and modern JavaScript frameworks
  • Champion an AI-first mindset, leveraging generative AI tools and LLM-based assistants to accelerate feature development, optimize code quality, and automate routine engineering tasks
  • Collaborate with cross-functional domain experts to architect and operate on biological datasets (genomic, diagnostic, or epidemiological), ensuring that surveillance workflows maintain high standards for data integrity, provenance, and security.
  • Influence the technical roadmap and long-term evolution of the Biosecurity platform, identifying and mitigating technical debt and architectural bottlenecks before they impact delivery.
  • Design and implement robust CI/CD pipelines where automated unit, integration, and security testing are treated as mandatory gates for every code deployment.
  • Drive engineering excellence by leading technical design reviews and providing critical feedback on software modularity, while upholding rigorous standards for documentation, observability, and long-term maintainability
  • Support production systems by monitoring performance, troubleshooting issues, and continuously improving reliability, including on-call support and triage in off hours

Minimum Requirements

  • 6-8+ years of professional software engineering experience, with significant full-stack development work, including ownership of complex systems and cross-team technical initiatives.
  • Strong proficiency in Python for backend development (our primary programming language).
  • Experience building and consuming APIs (REST and/or GraphQL).
  • Experience developing modern web frontends using JavaScript/TypeScript and frameworks such as React.
  • Demonstrated ability to integrate AI-assisted development tools (e.g., GitHub Copilot, Cursor, or similar) into daily workflows to increase productivity and code reliability
  • Proven experience collaborating  domain experts (scientific, operations, product, etc) to translate complex biological data (genomic, diagnostic, or epidemiological) into robust software solutions and actionable insights
  • Solid grounding in software engineering fundamentals: data structures, system design, version control, and modern CI/CD patterns for automated testing and deployment

Preferred Capabilities and Experience

  • Prior experience in bioinformatics, computational biology, public health, or a related domain.
  • Familiarity with cloud infrastructure (e.g., AWS) and containerized environments (Docker, Kubernetes).
  • Experience with data pipelines, workflow orchestration, or analytics platforms.
  • Exposure to regulated or sensitive-data environments (e.g., HIPAA, public health data).
  • Demonstrate high levels of ownership and independent execution
  • Comfort working in fast-moving, ambiguous problem spaces where requirements evolve
  • Flexibility and willingness to work on the highest priority needs of the business

The base salary range for this role is $134,300.00-$189,900.00. Actual pay within this range will depend on a candidate's skills, expertise, and experience. We also offer company stock awards, a comprehensive benefits package including medical, dental & vision coverage, health spending accounts, voluntary benefits, leave of absence policies, 401(k) program with employer contribution, 8 paid holidays in addition to a full-week winter shutdown and unlimited Paid Time Off policy.

 
It is the policy of Ginkgo Bioworks to provide equal employment opportunities to all employees, employment applicants, and EOE disability/vet. 
 

 
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I understand that I am applying for employment with Ginkgo Bioworks and am being asked to provide information in connection with my application. I further understand that Ginkgo gathers this information through a third-party service provider and that Ginkgo may also use other service providers to assist in the application process.  Ginkgo may share my information with such third-party service providers in connection with my application and for the start of employment.  Ginkgo will treat my information in accordance with Ginkgo's Privacy Policy.  By submitting this job application, I am acknowledging that I have reviewed and agree to Ginkgo's Privacy Policy as well as the privacy policies of the third-party service providers used by Ginkgo's associated with the application process.

Perks & Benefits Extracted with AI

  • 8 paid holidays and winter shutdown: 8 paid holidays in addition to a full-week winter shutdown
  • Paid Time Off: unlimited Paid Time Off policy

Important Notices: If you have a disability and you wish to discuss potential accommodations related to applying for employment, please contact [email protected].   Recruitment & Staffing AgenciesGinkgo Bioworks does not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to Ginkgo or its employees is strictly prohibited unless contacted directly by Ginkgo’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of Ginkgo Bioworks, and will not owe any referral or other fees with respect thereto.   Scam AlertPlease be aware of the potential for scams from individuals, organizations and internet sites that claim to represent Ginkgo Bioworks, Inc. in recruitment activities. Ginkgo conducts a formal recruitment process for all authorized positions posted and does not conduct interviews via social media or other third-party sites. This site is secure and any applications made here will feed to our legitimate Applicant Tracking System. If you’re contacted by a Ginkgo Recruiter, please ensure whomever is contacting you truly represents Ginkgo. We will never ask for the exchange of any money or credit card details during the recruitment process. Please be aware of any suspicious email activity from people who could be pretending to be recruiters or senior professionals at Ginkgo and please report any suspicious recruiting activity to: Your state’s Attorney General’s OfficeInternet Crime Complaint CenterUSA.govBetter Business Bureau     

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Salary
$134,300 – $189,900 per year
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