At Adaptive, we’re Powering the Age of Immune Medicine. Our goal is to harness the power of the adaptive immune system to transform the way diseases are diagnosed and treated.

As an Adapter, you’ll have the opportunity to make a difference in people’s lives. With Adaptive, you’ll create a career highlight through collaboration with bright, curious colleagues working at the apex of innovation and application.

It’s time for your next chapter. Discover your story with Adaptive.

Position Overview

Adaptive Biotechnologies is seeking a Senior Machine Learning Scientist to contribute to the development of deep learning models for TCR–pMHC specificity prediction. In this role, you will design, implement, train, and evaluate machine learning models that predict interactions between T cell receptors and peptide–MHC complexes, with a focus on integrating sequence and structural information.

Working as part of a collaborative modeling team, you will implement new modeling ideas, rigorously test their performance, and iterate quickly to improve predictive accuracy. This work leverages large-scale proprietary immune receptor datasets and shared GPU infrastructure to support rapid experimentation and model development.

You will work closely with computational scientists, immunologists, and machine learning engineers across the organization. The team combines expertise in immune biology, experimental assay development, and large-scale machine learning, enabling a tight feedback loop between model development and experimental data generation. Model outputs often highlight gaps in available data or suggest new experimental directions, while newly generated datasets provide additional signal for improving and validating predictive models.

Models developed in this role contribute directly to diagnostic and therapeutic initiatives both within Adaptive and through external partnerships. This role is well suited for a hands-on scientist who thrives in a collaborative environment and is motivated to translate cutting-edge machine learning into meaningful biological and clinical impact.

Key Responsibilities and Essential Functions

Design, implement, train, and iterate on novel deep learning models for TCR–pMHC specificity prediction.
Extend and adapt advances in protein language models, structure prediction, generative modeling, and representation learning to the immune receptor setting.
Utilize scalable training infrastructure to support large-scale model development and experimentation.
Conduct rigorous benchmarking and evaluation strategies to ensure models are scientifically sound and practically superior.
Translate biological principles of T cell recognition into principled modeling decisions.
Influence large-scale experimental data generation to maximize modeling leverage and long-term performance gains.
Provide input and technical recommendations to broader modeling discussions and roadmap planning.
Work closely with computational biology, immunology, translational, and engineering teams to ensure models are robust, reproducible, and aligned with overall product goals.
Communicate modeling insights, approaches, and results to cross-functional scientific audiences.
Contribute to publications, presentations, etc. through technical execution and analysis.

Position Requirements

Required

PhD in a quantitative discipline (e.g. Machine Learning, Computational Biology, Computer Science) + 5 years progressive experience applying machine learning to real-world scientific or biological problems OR equivalent combination of education and experience.
Progressive experience in the development and deployment of deep learning methods
Strong hands-on experience in python and modern ML tooling (PyTorch preferred)
Strong experience in deep learning architecture design and implementation.
Experience working with large datasets and high-performance computing environments
Ability to independently define, scope, and execute complex technical research problems.
Strong written and verbal communication skills, with ability to present highly technical material to diverse audiences.
Demonstrated ability to collaborate effectively in cross-functional, multi-disciplinary teams
Driven by impact: motivated to see models transition from research to clinical and commercial application.

Preferred

Experience in one or more of the following areas desired:
- Demonstrated track record of implementing novel machine learning solutions to biological problems, as demonstrated by publications, conference papers, patents, or delivered products.
- Protein structure prediction
- Protein design and generative modeling
- Protein language models
- Large-scale biological datasets
- Immunology and immune receptor specificity (antibody or TCR)

#LI-Remote

Compensation

Salary Range: $144,600 - $217,000

Other compensation elements include:

equity grant
bonus eligible

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Interested in this position, but don’t meet all the requirements? Adaptive is committed to building diverse, equitable, and inclusive teams across our organization. Please consider applying even if your experience doesn’t match all the qualifications; you may be the exact candidate we’re searching for!

Adaptive is not currently sponsoring candidates requiring work authorization support for this position.

Adaptive’s posted compensation information includes a base salary (or hourly rate) range and summary of other available total compensation. The base salary range represents a minimum-to-maximum salary (or hourly rate) available to candidates upon extension of offer. Base salary is thoughtfully considered upon offer and is determined through multiple evaluation checks throughout the interview process, including: a candidate’s ability to meet minimum qualifications (skills/experience/education), a candidate’s ability to thoughtfully address preferred qualifications, current market conditions, and internal pay equity. Listed base salary is exclusive of bonus, commission, equity, differential pay, benefits, and other incentives.

Adaptive's benefits at-a-glance.

Adaptive Biotechnologies is an Affirmative Action and Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, or protected veteran status and will not be discriminated against based on disability. Please refer the “Know Your Rights: Workplace Discrimination is Illegal” Poster for more information. If you’d like to view a copy of the company’s affirmative action plan or policy statement, please email [email protected].

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NOTE TO EMPLOYMENT AGENCIES: Adaptive Biotechnologies values our relationships with our Recruitment Partners and will only accept resumes from those partners who have active agreements with Adaptive. Adaptive Biotechnologies is not responsible for any fees related to resumes that are unsolicited or are received by any employee of Adaptive Biotechnologies who is not a member of the Human Resources team.

Senior Machine Learning Scientist

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